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Institute of

FG Forest Genetics

Malte Mader


Institut für Forstgenetik

Sieker Landstraße 2
22927 Großhansdorf

Employee in the Field of Activity Ecological Research, Focus Bioinformatics


2003 - 2008 Studies of computer science and bioinformatics at the University of Hamburg

2008 - 2013 Research assistant at the Center for Bioinformatics (department of genome informatics) at the University of Hamburg and the Institute of Pathology at the University Medical Center Hamburg-Eppendorf working at a project for the development of a web-based software for the integrative visualization of genomic data in cancer research.

Since 2014 Research assistant at the Thünen-Institute of Forest Genetics

Professional profile:

  • Analysis of next generation sequencing data
  • Software and database development
  • Visualization of genomic data
  • Linux system administration

Participation in the following projects:

Large scale project on genetic timber verification

Genome analysis in trees

Drought in Norway Spruce

GenMon

Publications

  1. 0

    Mader M, Blanc-Jolivet C, Kersten B, Liesebach H, Degen B (2022) A novel and diverse set of SNP markers for rangewide genetic studies in Picea abies. Conserv Genet Resources:in Press, DOI:10.1007/s12686-022-01276-1

    https://literatur.thuenen.de/digbib_extern/dn064912.pdf

  2. 1

    Degen B, Blanc-Jolivet C, Bakhtina S, Ianbaev R, Yanbaev YA, Mader M, Nürnberg S, Schröder H (2021) Applying targeted genotyping by sequencing with a new set of nuclear and plastid SNP and indel loci for Quercus robur and Quercus petraea. Conserv Genet Resources 13:345-347, DOI:10.1007/s12686-021-01207-6

    https://literatur.thuenen.de/digbib_extern/dn063676.pdf

  3. 2

    Bolte A, Sanders TGM, Natkhin M, Czajkowski T, Chakraborty T, Liesebach H, Kersten B, Mader M, Liesebach M, Lenz C, Lautner S, Löffler S, Kätzel R (2021) Coming from dry regions Norway spruce seedlings suffer less under drought. Eberswalde: Thünen Institute of Forest Ecosystems, 2 p, Project Brief Thünen Inst 2021/16a, DOI:10.3220/PB1623066406000

    https://literatur.thuenen.de/digbib_extern/dn063677.pdf

  4. 3

    Blanc-Jolivet C, Mader M, Bouda ZH-N, Massot M, Dainou K, Yene G, Opuni-Frimpong E, Degen B (2021) Development of new SNP and INDEL loci for the valuable African timber species Lophira alata. Conserv Genet Resources 13:85-87, DOI:10.1007/s12686-020-01173-5

    https://literatur.thuenen.de/digbib_extern/dn063410.pdf

  5. 4

    Degen B, Yanbaev YA, Blanc-Jolivet C, Ianbaev R, Bakhtina S, Mader M (2021) Genetic comparison of planted and natural Quercus robur stands in Russia. Silvae Genetica 70:1-8, DOI:10.2478/sg-2021-0001

    https://literatur.thuenen.de/digbib_extern/dn063194.pdf

  6. 5

    Degen B, Yanbaev YA, Mader M, Ianbaev R, Bakhtina S, Schröder H, Blanc-Jolivet C (2021) Impact of gene flow and introgression on the range wide genetic structure of Quercus robur (L.) in Europe. Forests 12:1425, DOI:10.3390/f12101425

    https://literatur.thuenen.de/digbib_extern/dn064066.pdf

  7. 6

    Bolte A, Sanders TGM, Natkhin M, Czajkowski T, Chakraborty T, Liesebach H, Kersten B, Mader M, Liesebach M, Lenz C, Lautner S, Löffler S, Kätzel R (2021) Junge Fichten aus trockenen Regionen leiden weniger unter Trockenstress. Eberswalde: Thünen-Institut für Waldökosysteme, 2 p, Project Brief Thünen Inst 2021/16, DOI:10.3220/PB1622452332000

    https://literatur.thuenen.de/digbib_extern/dn063652.pdf

  8. 7

    Müller NA, Kersten B, Leite Montalvao AP, Mähler N, Bernhardsson C, Bräutigam K, Carracedo Lorenzo Z, Hönicka H, Kumar V, Mader M, Pakull B, Robinson KM, Sabatti M, Vettori C, Ingvarsson PK, Cronk Q, Street NR, Fladung M (2020) A single gene underlies the dynamic evolution of poplar sex determination. Nat Plants 6:630-637, DOI:10.1038/s41477-020-0672-9

  9. 8

    Müller NA, Kersten B, Leite Montalvao AP, Hönicka H, Mader M, Pakull B, Fladung M (2020) A single gene underlies the dynamic evolution of poplar sex determination [Datenpublikation] [online]. , zu finden in <https://www.ncbi.nlm.nih.gov/bioproject/PRJNA542603/> [zitiert am 05.08.2020]

  10. 9

    Blanc-Jolivet C, Bakhtina S, Yanbaev R, Yanbaev YA, Mader M, Guichoux E, Degen B (2020) Development of new SNPs loci on Quercus robur and Quercus petraea for genetic studies covering the whole species’ distribution range. Conserv Genet Resources 12:597-600, DOI:10.1007/s12686-020-01141-z

  11. 10

    Pakull B, Schindler L, Mader M, Kersten B, Blanc-Jolivet C, Paulini M, Lemes MR, Ward S, Navarro CM, Cavers S, Sebbenn AM, Dio Odi, Guichoux E, Degen B (2020) Development of nuclear SNP markers for Mahogany (Swietenia spp.). Conserv Genet Resources 12:585-587, DOI:10.1007/s12686-020-01162-8

    https://literatur.thuenen.de/digbib_extern/dn063132.pdf

  12. 11

    Blanc-Jolivet C, Mader M, Bouda ZH-N, Guichoux E, Yene G, Opuni-Frimpong E, Degen B (2020) Development of SNP markers for the African timber species Nauclea diderrichii. Conserv Genet Resources 12:357-359, DOI:10.1007/s12686-019-01115-w

  13. 12

    Kersten B, Schott T, Mader M (2020) Fagus sylvatica isolate FASYL_29_1 mitochondrion, complete genome [Datenpublikation] [online]. , zu finden in <https://www.ncbi.nlm.nih.gov/nuccore/MT446430> [zitiert am 02.10.2020]

  14. 13

    Mader M, Schröder H, Schott T, Schöning-Stierand K, Leite Montalvao AP, Liesebach H, Liesebach M, Fussi B, Kersten B (2020) Mitochondrial genome of Fagus sylvatica L. as a source for taxonomic marker development in the Fagales. Plants(9):1274, DOI:10.3390/plants9101274

    https://literatur.thuenen.de/digbib_extern/dn062680.pdf

  15. 14

    Mader M, Kersten B (2020) Mitochondrial genome of Fagus sylvatica L. as a source for taxonomic marker development in the Fagales [Datenpublikation] [online]. , zu finden in <https://www.ncbi.nlm.nih.gov/bioproject/PRJNA648273/> [zitiert am 02.10.2020]

  16. 15

    Garcia-Davila CR, Aldana Gomero D, Renno J-F, Diaz Soria R, Hidalgo Pizango G, Flores Llampazo G, Castro-Ruiz D, Mejia de Loayza E, Angulo Chavez C, Mader M, Tysklind N, Paredes-Villanueva K, del Castillo Torres D, Degen B, Honorio Coronado EN (2020) Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon. Genetica 148:1-11, DOI:10.1007/s10709-019-00082-2

  17. 16

    Paredes-Villanueva K, Blanc-Jolivet C, Mader M, Honorio Coronado EN, Garcia-Davila CR, Sebbenn AM, Meyer-Sand BRV, Caron H, Tysklind N, Cavers S, Degen B (2020) Nuclear and plastid SNP markers for tracing Cedrela timber in the tropics. Conserv Genet Resources 12:239-244, DOI:10.1007/s12686-019-01110-1

  18. 17

    Honorio Coronado EN, Blanc-Jolivet C, Mader M, Garcia-Davila CR, Aldana Gomero D, del Castillo Torres D, Flores Llampazo G, Hidalgo Pizango G, Sebbenn AM, Meyer-Sand BRV, Paredes-Villanueva K, Tysklind N, Troispoux V, Massot M, Carvalho C, de Lima HC, Cardoso D, Degen B (2020) SNP markers as a successful molecular tool for assessing species identity and geographic origin of trees in the economically important South American legume genus Dipteryx. J Heredity 111(4):346-356, DOI:10.1093/jhered/esaa011

  19. 18

    Tysklind N, Blanc-Jolivet C, Mader M, Meyer-Sand BRV, Paredes-Villanueva K, Honorio Coronado EN, Garcia-Davila CR, Sebbenn AM, Caron H, Troispoux V, Guichoux E, Degen B (2019) Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species. Conserv Genet Resources 11(3):337-339, DOI:10.1007/s12686-019-01090-2

  20. 19

    Honorio Coronado EN, Blanc-Jolivet C, Mader M, Garcia-Davila CR, Sebbenn AM, Meyer-Sand BRV, Paredes-Villanueva K, Tysklind N, Troispoux V, Massot M, Degen B (2019) Development of nuclear and plastid SNP markers for genetic studies of Dipteryx tree species in Amazonia. Conserv Genet Resources 11(3):333-336, DOI:10.1007/s12686-019-01081-3

  21. 20

    Mader M, Kersten B (2019) Fagus sylvatica chloroplast, complete genome [Datenpublikation] [online]. , zu finden in <https://www.ncbi.nlm.nih.gov/nuccore/NC_041437.1> [zitiert am 14.05.2019]

  22. 21

    Brenner WG, Mader M, Müller NA, Hönicka H, Schröder H, Zorn I, Fladung M, Kersten B (2019) High level of conservation of mitochondrial RNA editing sites among four Populus species. G3 Genes Genomes Genetics 9:709-717, DOI:10.1534/g3.118.200763

    https://literatur.thuenen.de/digbib_extern/dn060912.pdf

  23. 22

    Brenner WG, Mader M, Müller NA, Hönicka H, Schröder H, Zorn I, Fladung M, Kersten B (2019) High level of conservation of mitochondrial RNA editing sites among four Populus species [Datenpublikation] [online]. , zu finden in <https://www.ncbi.nlm.nih.gov/bioproject/?term=(PRJNA514029)%20AND%20bioproject_sra[filter]%20NOT%20bioproject_gap[filter]> [zitiert am 12.02.2019]

  24. 23

    Chaves CL, Blanc-Jolivet C, Sebbenn AM, Mader M, Meyer-Sand BRV, Paredes-Villanueva K, Honorio Coronado EN, Garcia-Davila CR, Tysklind N, Troispoux V, Massot M, Degen B (2019) Nuclear and chloroplastic SNP markers for genetic studies of timber origin for Hymenaea trees. Conserv Genet Resources 11(3):329-331, DOI:10.1007/s12686-018-1077-1

  25. 24

    Sebbenn AM, Blanc-Jolivet C, Mader M, Meyer-Sand BRV, Paredes-Villanueva K, Honorio Coronado EN, Garcia-Davila CR, Tysklind N, Troispoux V, Delcamp A, Degen B (2019) Nuclear and plastidial SNP and INDEL markers for genetic tracking studies of Jacaranda copaia. Conserv Genet Resources 11(3):341-343, DOI:10.1007/s12686-019-01097-9

  26. 25

    Mader M, Liesebach H, Liesebach M, Kersten B (2019) The complete chloroplast genome sequence of Fagus sylvatica L. (Fagaceae). Mitochondrial DNA Part B 4(1):1818-1819, DOI:10.1080/23802359.2019.1612712

    https://literatur.thuenen.de/digbib_extern/dn060997.pdf

  27. 26

    Chaves CL, Degen B, Pakull B, Mader M, Honorio E, Ruas P, Tysklind N, Sebbenn AM (2018) Assessing the ability of chloroplast and nuclear DNA gene markers to verify the geographic origin of Jatoba (Hymenaea courbaril L.) timber. J Heredity 109(5):543-552, DOI:10.1093/jhered/esy017

  28. 27

    Mader M, Pakull B, Blanc-Jolivet C, Paulini-Drewes M, Bouda ZH-N, Degen B, Small I, Kersten B (2018) Complete chloroplast genome sequences of four Meliaceae species and comparative analyses. Int J Mol Sci 19(3):701, DOI:10.3390/ijms19030701

    https://literatur.thuenen.de/digbib_extern/dn059780.pdf

  29. 28

    Meyer-Sand BRV, Blanc-Jolivet C, Mader M, Paredes-Villanueva K, Tysklind N, Sebbenn AM, Guichoux E, Degen B (2018) Development of a set of SNP markers for population genetics studies of Ipe (Handroanthus sp.), a valuable tree genus from Latin America. Conserv Genet Resources 10(4):779-781, DOI:10.1007/s12686-017-0928-5

  30. 29

    Kersten B, Mader M, Müller NA, Fladung M, Degen B, Liesebach M, Liesebach H (2018) Genome-wide scan for diagnostic markers for bud burst in beech. In: Di Filippo A, Madsen P, Matsui T, Pederson N, Piovesan G, Sagheb-Talebi K (eds) 11th International Beech Symposium "Natural and managed beech forests as reference ecosystems for the sustainable management of forest resources and the conservation of biodiversity", 18-21 September 2018 ; International Union of Forest Research Organizations (IUFRO) Group 1.01.07 - "Ecology and Silviculturae of Beech". Viterbo: IUFRO, p 14

  31. 30

    Kersten B, Mader M, Müller NA, Schröder H, Pakull B, Blanc-Jolivet C, Liesebach H, Liesebach M, Degen B, Fladung M (2017) Application of NGS to develop molecular markers for monitoring and selection purposes in the context of climate change. In: International Union of Forest Research Organizations (ed) IUFRO 125th anniversary congress 2017 : 18-22 September 2017, Freiburg, Germany.

  32. 31

    Mader M, Kersten B, Pakull B, Blanc-Jolivet C, Degen B (2016) Assembly of tropical tree chloroplast genomes from NGS genome skimming data. In: 4th Plant Genomics Congress : Poster Presentation Abstract ; London, UK ; 9.5.2016-10.5.2016. London, p 21

  33. 32

    Schröder H, Cronn R, Yanbaev YA, Jennings T, Mader M, Degen B, Kersten B (2016) Development of molecular markers for determining continental origin of wood from White Oaks (Quercus L. sect. Quercus). PLoS One 11(6):e0158221, DOI:10.1371/journal.pone.0158221

    https://literatur.thuenen.de/digbib_extern/dn056903.pdf

  34. 33

    Pakull B, Mader M, Kersten B, Ekue MRM, Bouka Dipelet UG, Paulini M, Bouda ZH-N, Degen B (2016) Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp.. Conserv Genet Resources 8(3):293-297, DOI:10.1007/s12686-016-0557-4

  35. 34

    Kersten B, Faivre Rampant P, Mader M, Le Paslier M-C, Bounon R, Berard A, Vettori C, Schröder H, Leplé J-C, Fladung M (2016) Genome sequences of Populus tremula chloroplast and mitochondrion: Implications for holistic poplar breeding. PLoS One 11(1):e0147209, DOI:10.1371/journal.pone.0147209

    https://literatur.thuenen.de/digbib_extern/dn056232.pdf

  36. 35

    Schröder H, Cronn R, Yanbaev YA, Jennings T, Mader M, Degen B, Kersten B (2016) NGS-based development of molecular markers for determining continental origin of white oaks. In: 4th Plant Genomics Congress : Poster Presentation Abstract ; London, UK ; 9.5.2016-10.5.2016. London, p 1

  37. 36

    Mader M, Le Paslier M-C, Bounon R, Berard A, Faivre Rampant P, Fladung M, Leplé J-C, Kersten B (2016) Whole-genome draft assembly of Populus tremula x P. alba clone INRA 717-1B4. Silvae Genetica 65(2):74-79, DOI:10.1515/sg-2016-0019

    https://literatur.thuenen.de/digbib_extern/dn059214.pdf

  38. 37

    Kersten B, Faivre Rampant P, Mader M, Le Paslier M-C, Bounon R, Berard A, Vettori C, Schroeder H, Leple J-C, Fladung M (2015) Genome sequences of Populus tremula chloroplast and mitochondrion: implications for holistic poplar breeding : accession KP861984 [online]. Bethesda MD: GenBank, National Center for Biotechnology Information, US National Library of Medicine, 74 p, zu finden in <http://www.ncbi.nlm.nih.gov/nuccore/KP861984> [zitiert am 07.12.2015]

  39. 38

    Kersten B, Faivre Rampant P, Mader M, Le Paslier M-C, Bounon R, Berard A, Vettori C, Schroeder H, Leple J-C, Fladung M (2015) Genome sequences of Populus tremula chloroplast and mitochondrion: implications for holistic poplar breeding : accession KT337313 [online]. Bethesda MD: GenBank, National Center for Biotechnology Information, US National Library of Medicine, 225 p, zu finden in <http://www.ncbi.nlm.nih.gov/nuccore/936227452/> [zitiert am 07.12.2015]

  40. 39

    Kersten B, Faivre Rampant P, Mader M, Le Paslier M-C, Bounon R, Berard A, Vettori C, Schroeder H, Leple J-C, Fladung M (2015) Genome sequences of Populus tremula chloroplast and mitochondrion: implications for holistic poplar breeding : accession KT429213 [online]. Bethesda MD: GenBank, National Center for Biotechnology Information, US National Library of Medicine, 224 p, zu finden in <http://www.ncbi.nlm.nih.gov/nuccore/938485524/> [zitiert am 07.12.2015]

  41. 40

    Kersten B, Faivre Rampant P, Mader M, Le Paslier M-C, Chauveau A, Berard A, Vettori C, Leple J-C, Fladung M (2015) Genome sequences of Populus tremula chloroplast and mitochondrion: implications for holistic poplar breeding : accession KT780870 [online]. Bethesda MD: GenBank, National Center for Biotechnology Information, US National Library of Medicine, 74 p, zu finden in <http://www.ncbi.nlm.nih.gov/nuccore/KT780870> [zitiert am 07.12.2015]

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